OCA Atlas for 3R50

3R50

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
E, B, C, A, D

Primary reference

Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus., Chang WC, Liu KL, Hsu FC, Jeng ST, Cheng YS, PLoS One. 2012;7(7):e40618. Epub 2012 Jul 11. PMID:22808208

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]

Biological Unit Coordinates (3r50.pdb1.gz) 98 Kb

Biological Unit Coordinates (3r50.pdb2.gz) 99 Kb

CSU: Contacts of Structural Units for 3R50

Structure Factors (415 Kb)

Retrieve 3R50 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3R50 from S2C, [Save to disk]

Re-refined 3r50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3R50 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3r50] [3r50_A] [3r50_B] [3r50_C] [3r50_D] [3r50_E]

SWISS-PROT database:

Domain found in 3R50: [Jacalin ] by SMART

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