OCA Atlas for 3R5R

3R5R

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

F42

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, D, B, E, A

Primary reference

Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824., Cellitti SE, Shaffer J, Jones DH, Mukherjee T, Gurumurthy M, Bursulaya B, Boshoff HI, Choi I, Nayyar A, Lee YS, Cherian J, Niyomrattanakit P, Dick T, Manjunatha UH, Barry CE 3rd, Spraggon G, Geierstanger BH, Structure. 2012 Jan 11;20(1):101-12. PMID:22244759

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]

Biological Unit Coordinates (3r5r.pdb1.gz) 42 Kb

Biological Unit Coordinates (3r5r.pdb2.gz) 43 Kb

Biological Unit Coordinates (3r5r.pdb3.gz) 42 Kb

Biological Unit Coordinates (3r5r.pdb4.gz) 43 Kb

Biological Unit Coordinates (3r5r.pdb5.gz) 42 Kb

LPC: Ligand-Protein Contacts for 3R5R

CSU: Contacts of Structural Units for 3R5R

Structure Factors (1420 Kb)

Retrieve 3R5R in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3R5R from S2C, [Save to disk]

Re-refined 3r5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3R5R in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3r5r] [3r5r_A] [3r5r_B] [3r5r_C] [3r5r_D] [3r5r_E]

SWISS-PROT database:

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