3R5U Hydrolase date Mar 19, 2011
title The Structure Of Manganese Bound Thermococcus Thioreducens I Pyrophosphatase
authors R.C.Hughes, L.Coates, E.J.Meehan, J.M.Garcia-Ruiz, J.D.Ng
compound source
Molecule: Tt-Ippase
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermococcus Thioreducens
Organism_taxid: 277988
Strain: Ogl-20
Gene: Tt-Ippase
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: H 3 2
R_factor 0.150 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.514 114.514 148.438 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.92 Å
ligand MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3r5u.pdb1.gz) 203 Kb
  • LPC: Ligand-Protein Contacts for 3R5U
  • CSU: Contacts of Structural Units for 3R5U
  • Structure Factors (682 Kb)
  • Retrieve 3R5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R5U from S2C, [Save to disk]
  • Re-refined 3r5u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3R5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3R5U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R5U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r5u_B] [3r5u] [3r5u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3R5U
  • Community annotation for 3R5U at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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