3R8A	Nuclear Protein	date	Mar 23, 2011
title	X-Ray Crystal Structure Of The Nuclear Hormone Receptor Ppar A Complex With A Compound With Dual Ppar Gamma Agonism And Angiotensin II Type I Receptor Antagonism Activity
authors	J.F.Ohren
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1c3, Pparg Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.230 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.697 61.831 118.936 90.00 102.04 90.00
method	X-Ray Diffraction	resolution	2.41 Å
ligand	HIG BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of a series of imidazo[4,5-b]pyridines with dual activity at angiotensin II type 1 receptor and peroxisome proliferator-activated receptor-gamma., Casimiro-Garcia A, Filzen GF, Flynn D, Bigge CF, Chen J, Davis JA, Dudley DA, Edmunds JJ, Esmaeil N, Geyer A, Heemstra RJ, Jalaie M, Ohren JF, Ostroski R, Ellis T, Schaum RP, Stoner C, J Med Chem. 2011 Jun 23;54(12):4219-33. Epub 2011 May 26. PMID:21557540

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (3r8a.pdb1.gz) 43 Kb Biological Unit Coordinates (3r8a.pdb2.gz) 42 Kb LPC: Ligand-Protein Contacts for 3R8A CSU: Contacts of Structural Units for 3R8A Structure Factors (524 Kb) Retrieve 3R8A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3R8A from S2C, [Save to disk] Re-refined 3r8a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3R8A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3R8A

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3R8A, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3r8a_B] [3r8a] [3r8a_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3R8A: [HOLI ] by SMART

Other resources with information on 3R8A

Community annotation for 3R8A at PDBWiki (http://pdbwiki.org)

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