3R8V CDK2 in complex with inhibitor RC-1-135 date
authors Betzi, S., Alam, R., Han, H., Becker, A., Schonbrunn, E.
compound source
symmetry
R_factor
R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand Z62 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of Highly Potent and Selective Diaminothiazole Inhibitors of Cyclin-Dependent Kinases., Schonbrunn E, Betzi S, Alam R, Martin MP, Becker A, Han H, Francis R, Chakrasali R, Jakkaraj S, Kazi A, Sebti SM, Cubitt CL, Gebhard AW, Hazlehurst LA, Tash JS, Georg GI, J Med Chem. 2013 May 6. PMID:23600925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3r8v.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3R8V
  • CSU: Contacts of Structural Units for 3R8V
  • Structure Factors (280 Kb)
  • Retrieve 3R8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R8V from S2C, [Save to disk]
  • Re-refined 3r8v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3R8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3R8V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3R8V, from MSDmotif at EBI
  • Fold representative 3r8v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r8v] [3r8v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3R8V: [S_TKc ] by SMART
  • Other resources with information on 3R8V
  • Community annotation for 3R8V at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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