3RAQ Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesion date
authors Rechkoblit, O., Patel, D.J.
compound source
symmetry
R_factor
R_Free 0.23505
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.25
ligand CA, DGT, DOC, EPE, MG1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceImplications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions., Rechkoblit O, Delaney JC, Essigmann JM, Patel DJ, Structure. 2011 Jun 8;19(6):821-32. doi: 10.1016/j.str.2011.03.020. PMID:21645853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (3raq.pdb1.gz) 142 Kb
  • Biological Unit Coordinates (3raq.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 3RAQ
  • CSU: Contacts of Structural Units for 3RAQ
  • Structure Factors (387 Kb)
  • Retrieve 3RAQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RAQ from S2C, [Save to disk]
  • Re-refined 3raq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RAQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RAQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RAQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3raq_D] [3raq_A] [3raq] [3raq_E] [3raq_J] [3raq_H] [3raq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RAQ
  • Community annotation for 3RAQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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