3RAY Transcription date Mar 28, 2011
title Crystal Structure Of Methyltransferase Domain Of Human Pr Do Containing Protein 11
authors A.Dong, H.Zeng, P.Loppnau, J.R.Walker, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, J.Min, H.Wu, Structural Genomics C (Sgc)
compound source
Molecule: Pr Domain-Containing Protein 11
Chain: A
Fragment: Residues 79-314
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prdm11, Pfm8
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)V2rprare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.154 55.156 106.283 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand CL, NA, UNX, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3ray.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3RAY
  • CSU: Contacts of Structural Units for 3RAY
  • Structure Factors (394 Kb)
  • Retrieve 3RAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RAY from S2C, [Save to disk]
  • Re-refined 3ray structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RAY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RAY, from MSDmotif at EBI
  • Fold representative 3ray from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ray_A] [3ray]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RAY: [SET ] by SMART
  • Other resources with information on 3RAY
  • Community annotation for 3RAY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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