3RCH Lyase date Mar 31, 2011
title Crystal Structure Of Human Aromatic L-Amino Acid Decarboxyla In The Open Conformation With Llp And Plp Bound To Chain-A B Respectively
authors G.Giardina, R.Montioli, S.Gianni, B.Cellini, A.Paiardini, C.Borri Voltattorni, F.Cutruzzola
compound source
Molecule: Aromatic L-Amino Acid Decarboxylase
Chain: A
Synonym: Aadc, Dopa Decarboxylase, Ddc
Ec: 4.1.1.28
Engineered: Yes
Other_details: Monomer-A With Plp Bound And Internal Aldimi (K303+Plp = Llp);
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aadc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrchis2a

Molecule: Aromatic L-Amino Acid Decarboxylase
Chain: B
Synonym: Aadc, Dopa Decarboxylase, Ddc
Ec: 4.1.1.28
Engineered: Yes
Other_details: Monomer-A With Plp Bound And Internal Aldimi (K303+Plp = Llp)

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aadc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrchis2a
symmetry Space Group: P 41 21 2
R_factor 0.201 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
177.000 177.000 74.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand LLP, PLP enzyme Lyase E.C.4.1.1.28 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOpen conformation of human DOPA decarboxylase reveals the mechanism of PLP addition to Group II decarboxylases., Giardina G, Montioli R, Gianni S, Cellini B, Paiardini A, Voltattorni CB, Cutruzzola F, Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20514-9. Epub 2011 Dec 5. PMID:22143761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (3rch.pdb1.gz) 273 Kb
  • LPC: Ligand-Protein Contacts for 3RCH
  • CSU: Contacts of Structural Units for 3RCH
  • Structure Factors (1575 Kb)
  • Retrieve 3RCH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RCH from S2C, [Save to disk]
  • Re-refined 3rch structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RCH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RCH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RCH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rch] [3rch_B] [3rch_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RCH
  • Community annotation for 3RCH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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