3RCO Dna Binding Protein date Mar 31, 2011
title Crystal Structure Of A Conserved Motif In Human Tdrd7
authors A.Dong, C.Xu, J.R.Walker, R.Lam, Y.Guo, C.Bian, Y.Li, C.Bountra, J.W C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consor (Sgc)
compound source
Molecule: Tudor Domain-Containing Protein 7
Chain: A, B
Synonym: Pctaire2-Binding Protein, Tudor Repeat Associator Pctaire 2, Trap;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tdrd7, Pctaire2bp
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Codon Plus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: I 2 3
R_factor 0.174 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.788 99.788 99.788 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (3rco.pdb1.gz) 330 Kb
  • Biological Unit Coordinates (3rco.pdb2.gz) 175 Kb
  • Biological Unit Coordinates (3rco.pdb3.gz) 40 Kb
  • Biological Unit Coordinates (3rco.pdb4.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3RCO
  • CSU: Contacts of Structural Units for 3RCO
  • Structure Factors (235 Kb)
  • Retrieve 3RCO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RCO from S2C, [Save to disk]
  • Re-refined 3rco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RCO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RCO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RCO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rco_A] [3rco] [3rco_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3RCO
  • Community annotation for 3RCO at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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