3RCW Transcription date Mar 31, 2011
title Crystal Structure Of The Bromodomain Of Human Brd1
authors P.Filippakopoulos, T.Keates, S.Picaud, I.Felletar, A.C.W.Pike, T. F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bromodomain-Containing Protein 1
Chain: A, B, C, D, E, F, G, H
Synonym: Br140-Like Protein, Bromodomain And Phd Finger-Con Protein 2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd1, Brl, Brpf2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1
R_factor 0.206 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.137 51.245 130.626 100.61 90.75 93.89
method X-Ray Diffractionresolution 2.21 Å
ligand ACT, EDO, MB3 enzyme
Primary referenceHistone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]
  • Biological Unit Coordinates (3rcw.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (3rcw.pdb2.gz) 41 Kb
  • Biological Unit Coordinates (3rcw.pdb3.gz) 40 Kb
  • Biological Unit Coordinates (3rcw.pdb4.gz) 40 Kb
  • Biological Unit Coordinates (3rcw.pdb5.gz) 40 Kb
  • Biological Unit Coordinates (3rcw.pdb6.gz) 39 Kb
  • Biological Unit Coordinates (3rcw.pdb7.gz) 39 Kb
  • Biological Unit Coordinates (3rcw.pdb8.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3RCW
  • CSU: Contacts of Structural Units for 3RCW
  • Structure Factors (805 Kb)
  • Retrieve 3RCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RCW from S2C, [Save to disk]
  • Re-refined 3rcw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RCW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RCW, from MSDmotif at EBI
  • Fold representative 3rcw from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rcw_A] [3rcw_H] [3rcw_C] [3rcw] [3rcw_E] [3rcw_F] [3rcw_G] [3rcw_D] [3rcw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RCW: [BROMO ] by SMART
    • Other resources with information on 3RCW
  • Community annotation for 3RCW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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