3RED Lyase date Apr 04, 2011
title 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isoz
authors C.B.C.Cielo, T.Yamane, Y.Asano, N.Watanabe, A.Suzuki, Y.Fukuta
compound source
Molecule: Hydroxynitrile Lyase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
 Organism_scientific: Prunus Mume
Organism_common: Japanese Apricot
Organism_taxid: 102107
Tissue: Seed
symmetry Space Group: P 1
R_factor 0.191 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.019 113.302 169.488 89.92 79.13 80.83
method X-Ray Diffractionresolution 3.03 Å
ligand FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (959 Kb) [Save to disk]
  • Biological Unit Coordinates (3red.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (3red.pdb2.gz) 92 Kb
  • Biological Unit Coordinates (3red.pdb3.gz) 91 Kb
  • Biological Unit Coordinates (3red.pdb4.gz) 92 Kb
  • Biological Unit Coordinates (3red.pdb5.gz) 91 Kb
  • Biological Unit Coordinates (3red.pdb6.gz) 92 Kb
  • Biological Unit Coordinates (3red.pdb7.gz) 92 Kb
  • Biological Unit Coordinates (3red.pdb8.gz) 91 Kb
  • Biological Unit Coordinates (3red.pdb9.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3RED
  • CSU: Contacts of Structural Units for 3RED
  • Structure Factors (2434 Kb)
  • Retrieve 3RED in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RED from S2C, [Save to disk]
  • Re-refined 3red structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RED in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RED
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RED, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3red_F] [3red_I] [3red_A] [3red_G] [3red_C] [3red_H] [3red_B] [3red_K] [3red_E] [3red_J] [3red_L] [3red] [3red_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3RED
  • Community annotation for 3RED at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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