3REJ	Structural Protein Dna	date	Apr 04, 2011
title	2.55 Angstrom Crystal Structure Of The Nucleosome Core Parti Assembled With A 146 Bp Alpha-Satellite Dna (Ncp146b)
authors	B.Wu, C.A.Davey
compound		source
Molecule: Histone H3.2 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2a Type 1 Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (146-Mer) Chain: I, J Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.234 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.067 109.374 176.465 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	MN, SO4	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation., Wu B, Davey GE, Nazarov AA, Dyson PJ, Davey CA, Nucleic Acids Res. 2011 Oct;39(18):8200-12. Epub 2011 Jun 30. PMID:21724603

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk] Biological Unit Coordinates (3rej.pdb1.gz) 247 Kb LPC: Ligand-Protein Contacts for 3REJ CSU: Contacts of Structural Units for 3REJ Structure Factors (3499 Kb) Retrieve 3REJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3REJ from S2C, [Save to disk] Re-refined 3rej structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3REJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3REJ

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3REJ, from MSDmotif at EBI Fold representative 3rej from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rej] [3rej_I] [3rej_J] [3rej_B] [3rej_D] [3rej_E] [3rej_F] [3rej_A] [3rej_G] [3rej_C] [3rej_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3REJ: [H2A] [H2B] [H3] [H4 ] by SMART

Other resources with information on 3REJ

Community annotation for 3REJ at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---