3REZ Cell Adhesion date Apr 05, 2011
title Glycoprotein Gpib Variant
authors P.A.Mcewan, W.Yang, K.H.Carr, X.Mo, X.Zheng, R.Li, J.Emsley
compound source
Molecule: Platelet Glycoprotein Ib Beta Chain, Platelet Gly Ix;
Chain: A, B, C, D
Synonym: Gp-Ib Beta, Gpib-Beta, Gpibb, Antigen Cd42b-Beta, Gpix, Glycoprotein 9;
Engineered: Yes
Other_details: Gp1bb And Gpix Chimeria
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gp1bb, Gp9
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
symmetry Space Group: P 31 2 1
R_factor 0.211 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.010 72.010 171.731 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand FUL, MAN, NAG, PEG enzyme
Primary referenceQuaternary organization of GPIb-IX complex and insights into Bernard-Soulier syndrome revealed by the structures of GPIbbeta and a GPIbbeta/GPIX chimera., McEwan PA, Yang W, Carr KH, Mo X, Zheng X, Li R, Emsley J, Blood. 2011 Nov 10;118(19):5292-301. Epub 2011 Sep 8. PMID:21908432
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (3rez.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3rez.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3rez.pdb3.gz) 41 Kb
  • Biological Unit Coordinates (3rez.pdb4.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3REZ
  • CSU: Contacts of Structural Units for 3REZ
  • Structure Factors (323 Kb)
  • Retrieve 3REZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3REZ from S2C, [Save to disk]
  • Re-refined 3rez structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3REZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3REZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3REZ, from MSDmotif at EBI
  • Fold representative 3rez from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rez] [3rez_C] [3rez_D] [3rez_A] [3rez_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3REZ: [LRRCT] [LRRNT ] by SMART
  • Other resources with information on 3REZ
  • Community annotation for 3REZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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