3RGF Transferase,Transcription date Apr 08, 2011
title Crystal Structure Of Human Cdk8cycc
authors E.V.Schneider, J.Boettcher, M.Blaesse, R.Huber, K.Maskos
compound source
Molecule: Cyclin-Dependent Kinase 8
Chain: A
Fragment: Unp Residues 1-403
Synonym: Cdk8, Cell Division Protein Kinase 8, Mediator Com Subunit Cdk8, Mediator Of Rna Polymerase II Transcription S Cdk8, Protein Kinase K35;
Ec: 2.7.11.22, 2.7.11.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk8
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Cyclin-C
Chain: B
Synonym: Cycc, Srb11 Homolog, Hsrb11
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccnc
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.690 70.610 79.140 90.00 108.31 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand BAX, EDO, GOL BindingDB enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • cyclin-dependent protein ser...


  • Primary referenceThe Structure of CDK8/CycC Implicates Specificity in the CDK/Cyclin Family and Reveals Interaction with a Deep Pocket Binder., Schneider EV, Bottcher J, Blaesse M, Neumann L, Huber R, Maskos K, J Mol Biol. 2011 Sep 16;412(2):251-66. Epub 2011 Jul 23. PMID:21806996
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (3rgf.pdb1.gz) 203 Kb
  • LPC: Ligand-Protein Contacts for 3RGF
  • CSU: Contacts of Structural Units for 3RGF
  • Structure Factors (559 Kb)
  • Retrieve 3RGF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RGF from S2C, [Save to disk]
  • Re-refined 3rgf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RGF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RGF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RGF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rgf_A] [3rgf] [3rgf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3RGF: [CYCLIN] [S_TKc ] by SMART
  • Other resources with information on 3RGF
  • Community annotation for 3RGF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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