3RGK Oxygen Transport date Apr 08, 2011
title Crystal Structure Of Human Myoglobin Mutant K45r
authors S.R.Hubbard
compound source
Molecule: Myoglobin
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.175 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.200 86.200 35.660 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand HEM, SO4 enzyme
note 3RGK supersedes 2MM1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray crystal structure of a recombinant human myoglobin mutant at 2.8 A resolution., Hubbard SR, Hendrickson WA, Lambright DG, Boxer SG, J Mol Biol. 1990 May 20;213(2):215-8. PMID:2342104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (3rgk.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 3RGK
  • CSU: Contacts of Structural Units for 3RGK
  • Structure Factors (124 Kb)
  • Retrieve 3RGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RGK from S2C, [Save to disk]
  • Re-refined 3rgk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RGK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RGK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rgk_A] [3rgk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RGK
  • Community annotation for 3RGK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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