3RGP Oxidoreductase date Apr 08, 2011
title Structural And Kinetic Analysis Of The Beef Liver Catalase C With Nitric Oxide
authors N.Purwar, M.Schmidt
compound source
Molecule: Catalase
Chain: A, B, C, D
Fragment: Unp Residues 4-502
Ec: 1.11.1.6
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.110 139.940 228.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand HEM, NO enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • catalase activity
  • peroxidase activity


  • Primary referenceInteraction of Nitric Oxide with Catalase: Structural and Kinetic Analysis., Purwar N, McGarry JM, Kostera J, Pacheco AA, Schmidt M, Biochemistry. 2011 May 6. PMID:21524057
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk]
  • Biological Unit Coordinates (3rgp.pdb1.gz) 357 Kb
  • LPC: Ligand-Protein Contacts for 3RGP
  • CSU: Contacts of Structural Units for 3RGP
  • Structure Factors (11295 Kb)
  • Retrieve 3RGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RGP from S2C, [Save to disk]
  • Re-refined 3rgp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RGP in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RGP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RGP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rgp_B] [3rgp] [3rgp_C] [3rgp_A] [3rgp_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RGP: [Catalase ] by SMART
  • Other resources with information on 3RGP
  • Community annotation for 3RGP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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