3RIL Hydrolase Hydrolase Inhibitor date Apr 13, 2011
title The Acid Beta-Glucosidase Active Site Exhibits Plasticity In 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors: Implications Pharmacological Chaperone Design For Gaucher Disease
authors S.D.Orwig, R.L.Lieberman
compound source
Molecule: Glucosylceramidase
Chain: A, B, C, D
Synonym: Acid Beta-Glucosidase, Alglucerase, Beta-Glucocere D-Glucosyl-N-Acylsphingosine Glucohydrolase, Imiglucerase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gba, Gc, Gluc
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
symmetry Space Group: P 1 21 1
R_factor 0.171 R_Free 0.232
length a length b length c angle alpha angle beta angle gamma
109.217 91.425 152.659 90.00 110.95 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 3RK, NAG, SO4 BindingDB enzyme Hydrolase E.C. BRENDA
A, D, C, B
  • negative regulation of inter...

  • Primary referenceBinding of 3,4,5,6-tetrahydroxyazepanes to the acid-beta-glucosidase active site: implications for pharmacological chaperone design for Gaucher disease., Orwig SD, Tan YL, Grimster NP, Yu Z, Powers ET, Kelly JW, Lieberman RL, Biochemistry. 2011 Dec 13;50(49):10647-57. Epub 2011 Nov 14. PMID:22047104
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (354 Kb) [Save to disk]
  • Biological Unit Coordinates (3ril.pdb1.gz) 345 Kb
  • Biological Unit Coordinates (3ril.pdb2.gz) 345 Kb
  • Biological Unit Coordinates (3ril.pdb3.gz) 345 Kb
  • Biological Unit Coordinates (3ril.pdb4.gz) 345 Kb
  • Biological Unit Coordinates (3ril.pdb5.gz) 345 Kb
  • LPC: Ligand-Protein Contacts for 3RIL
  • CSU: Contacts of Structural Units for 3RIL
  • Structure Factors (1701 Kb)
  • Retrieve 3RIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RIL from S2C, [Save to disk]
  • Re-refined 3ril structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RIL in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RIL
  • Cartoon representation from PDB Cartoon
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RIL, from MSDmotif at EBI
  • Fold representative 3ril from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ril] [3ril_C] [3ril_D] [3ril_B] [3ril_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RIL
  • Community annotation for 3RIL at PDBWiki (http://pdbwiki.org)
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