3RJJ	Transferase, Lyase Dna	date	Apr 15, 2011
title	Ternary Complex Crystal Structure Of Dna Polymerase Beta Wit 8odg Provides Insight Into Mutagenic Lesion Bypass
authors	V.K.Batra, W.A.Beard, S.H.Wilson
compound		source
Molecule: Dna Polymerase Beta Chain: A Ec: 2.7.7.7, 4.2.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tap56 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pwl11
Molecule: Dna (5'-D(Cpcpgpapcpgp(8og) Pcpgpcpaptpcpapgpc)-3'); Chain: T Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Gpcptpgpaptpgpcpgpc)-3') Chain: P Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Pgptpcpgpg)-3') Chain: D Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 1 21 1	R_factor 0.202 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.480 79.410 54.910 90.00 105.51 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	8OG, NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion., Batra VK, Shock DD, Beard WA, McKenna CE, Wilson SH, Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):113-8. Epub 2011 Dec 16. PMID:22178760

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (3rjj.pdb1.gz) 76 Kb LPC: Ligand-Protein Contacts for 3RJJ CSU: Contacts of Structural Units for 3RJJ Structure Factors (430 Kb) Retrieve 3RJJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RJJ from S2C, [Save to disk] Re-refined 3rjj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RJJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RJJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RJJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rjj_A] [3rjj_P] [3rjj_T] [3rjj_D] [3rjj] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3RJJ: [HhH1] [POLXc ] by SMART

Other resources with information on 3RJJ

Community annotation for 3RJJ at PDBWiki (http://pdbwiki.org)

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