3RK6 Translation Regulator date Apr 17, 2011
title Crystal Structure Of The Middle Domain Of Human Paip1
authors J.Lei, J.R.Mesters, R.Hilgenfeld
compound source
Molecule: Polyadenylate-Binding Protein-Interacting Protein
Chain: A, B
Fragment: Middle Domain (Mif4g, Unp Residues 157-373)
Synonym: Paip-1, Pabp-Interacting Protein 1, Poly(A)-Bindin Interacting Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Paip1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.610 76.050 62.420 90.00 96.47 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the middle domain of human poly(A)-binding protein-interacting protein 1., Lei J, Mesters JR, Brunn AV, Hilgenfeld R, Biochem Biophys Res Commun. 2011 Apr 23. PMID:21539810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3rk6.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3rk6.pdb2.gz) 40 Kb
  • CSU: Contacts of Structural Units for 3RK6
  • Structure Factors (549 Kb)
  • Retrieve 3RK6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RK6 from S2C, [Save to disk]
  • Re-refined 3rk6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RK6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RK6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RK6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rk6] [3rk6_B] [3rk6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RK6: [MIF4G ] by SMART
  • Other resources with information on 3RK6
  • Community annotation for 3RK6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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