3RL7 Membrane Protein Signaling Protein date Apr 19, 2011
title Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
authors Z.Zhang, H.Li, G.Wu
compound source
Molecule: Disks Large Homolog 1
Chain: B, A, C, D, E, F
Fragment: Unp Residues 220-317
Synonym: Synapse-Associated Protein 97, Sap-97, Sap97, Hdlg
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: 11-Mer Peptide From Adenomatous Polyposis Coli Pr
Chain: G, H, I, J, K, L
Synonym: Apc-C11
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 3
R_factor 0.193 R_Free 0.231
length a length b length c angle alpha angle beta angle gamma
105.627 105.627 50.830 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceMolecular basis for the recognition of adenomatous polyposis coli by the Discs Large 1 protein., Zhang Z, Li H, Chen L, Lu X, Zhang J, Xu P, Lin K, Wu G, PLoS One. 2011;6(8):e23507. Epub 2011 Aug 17. PMID:21858148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (3rl7.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3rl7.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (3rl7.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (3rl7.pdb4.gz) 32 Kb
  • Biological Unit Coordinates (3rl7.pdb5.gz) 28 Kb
  • Biological Unit Coordinates (3rl7.pdb6.gz) 31 Kb
  • CSU: Contacts of Structural Units for 3RL7
  • Structure Factors (652 Kb)
  • Retrieve 3RL7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RL7 from S2C, [Save to disk]
  • Re-refined 3rl7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RL7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RL7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RL7, from MSDmotif at EBI
  • Fold representative 3rl7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rl7_J] [3rl7_D] [3rl7_A] [3rl7_E] [3rl7] [3rl7_L] [3rl7_G] [3rl7_C] [3rl7_H] [3rl7_K] [3rl7_F] [3rl7_B] [3rl7_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RL7: [PDZ ] by SMART
  • Alignments of the sequence of 3RL7 with the sequences similar proteins can be viewed for 3RL7's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3RL7
  • Community annotation for 3RL7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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