3RL7 Membrane Protein Signaling Protein date Apr 19, 2011
title Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
authors Z.Zhang, H.Li, G.Wu
compound source
Molecule: Disks Large Homolog 1
Chain: B, A, C, D, E, F
Fragment: Unp Residues 220-317
Synonym: Synapse-Associated Protein 97, Sap-97, Sap97, Hdlg
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: 11-Mer Peptide From Adenomatous Polyposis Coli Pr
Chain: G, H, I, J, K, L
Synonym: Apc-C11
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 3
R_factor 0.193 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.627 105.627 50.830 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceMolecular basis for the recognition of adenomatous polyposis coli by the Discs Large 1 protein., Zhang Z, Li H, Chen L, Lu X, Zhang J, Xu P, Lin K, Wu G, PLoS One. 2011;6(8):e23507. Epub 2011 Aug 17. PMID:21858148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (3rl7.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3rl7.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (3rl7.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (3rl7.pdb4.gz) 32 Kb
  • Biological Unit Coordinates (3rl7.pdb5.gz) 28 Kb
  • Biological Unit Coordinates (3rl7.pdb6.gz) 31 Kb
  • CSU: Contacts of Structural Units for 3RL7
  • Structure Factors (652 Kb)
  • Retrieve 3RL7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RL7 from S2C, [Save to disk]
  • Re-refined 3rl7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RL7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RL7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RL7, from MSDmotif at EBI
  • Fold representative 3rl7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rl7_J] [3rl7_D] [3rl7_A] [3rl7_E] [3rl7] [3rl7_L] [3rl7_G] [3rl7_C] [3rl7_H] [3rl7_K] [3rl7_F] [3rl7_B] [3rl7_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RL7: [PDZ ] by SMART
  • Other resources with information on 3RL7
  • Community annotation for 3RL7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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