3RLO Dna Binding Protein date Apr 19, 2011
title Structural Basis Of Cytosolic Dna Recognition By Innate Rece
authors T.C.Jin, T.Xiao
compound source
Molecule: Gamma-Interferon-Inducible Protein 16
Chain: A
Fragment: Unp Residues 571-766
Synonym: Ifi-16, Interferon-Inducible Myeloid Differentiati Transcriptional Activator;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifi16, Ifngip1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a
symmetry Space Group: H 3 2
R_factor 0.168 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.562 128.562 67.743 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand EDO, FMT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor., Jin T, Perry A, Jiang J, Smith P, Curry JA, Unterholzner L, Jiang Z, Horvath G, Rathinam VA, Johnstone RW, Hornung V, Latz E, Bowie AG, Fitzgerald KA, Xiao TS, Immunity. 2012 Apr 20;36(4):561-71. Epub 2012 Apr 5. PMID:22483801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (3rlo.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3RLO
  • CSU: Contacts of Structural Units for 3RLO
  • Structure Factors (602 Kb)
  • Retrieve 3RLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RLO from S2C, [Save to disk]
  • Re-refined 3rlo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RLO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RLO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rlo_A] [3rlo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RLO
  • Community annotation for 3RLO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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