3RLR Chaperone date Apr 20, 2011
title Co-Crystal Structure Of The Hsp90 Atp Binding Domain In Comp 4-(2,4-Dichloro-5-Methoxyphenyl)-2,6-Dimethyl-7h-Pyrrolo[2, D]Pyrimidine-5-Carbonitrile
authors P-P.Kung, P-J.Sinnema, P.Richardson, M.J.Hickey, K.S.Gajiwala, F. B.Huang, G.Mcclellan, J.Wang, K.Maegley, S.Bergqvist, P.P.Mehta,
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A, B
Fragment: Atp Binding Domain (Unp Residues 9-225)
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.051 79.131 117.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 3RR, PO4 enzyme
Primary referenceDesign strategies to target crystallographic waters applied to the Hsp90 molecular chaperone., Kung PP, Sinnema PJ, Richardson P, Hickey MJ, Gajiwala KS, Wang F, Huang B, McClellan G, Wang J, Maegley K, Bergqvist S, Mehta PP, Kania R, Bioorg Med Chem Lett. 2011 Jun 15;21(12):3557-62. Epub 2011 May 5. PMID:21612924
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3rlr.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3rlr.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3rlr.pdb3.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3RLR
  • CSU: Contacts of Structural Units for 3RLR
  • Structure Factors (1825 Kb)
  • Retrieve 3RLR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RLR from S2C, [Save to disk]
  • Re-refined 3rlr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RLR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
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    • Visual 3D analysis of 3RLR
  • Cartoon representation from PDB Cartoon
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    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RLR, from MSDmotif at EBI
  • Fold representative 3rlr from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rlr_A] [3rlr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3RLR with the sequences similar proteins can be viewed for 3RLR's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
    • Other resources with information on 3RLR
  • Community annotation for 3RLR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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