OCA Atlas for 3RMA

3RMA

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CTG

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, C, D, A	DNA-directed DNA polymerase ... nuclease activity exonuclease activity 3'-5' exonuclease activity

Primary reference

A Crystallographic Study of the Role of Sequence Context in Thymine Glycol Bypass by a Replicative DNA Polymerase Serendipitously Sheds Light on the Exonuclease Complex., Aller P, Duclos S, Wallace SS, Doublie S, J Mol Biol. 2011 Jul 18. PMID:21781974

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (628 Kb) [Save to disk]

Biological Unit Coordinates (3rma.pdb1.gz) 163 Kb

Biological Unit Coordinates (3rma.pdb2.gz) 161 Kb

Biological Unit Coordinates (3rma.pdb3.gz) 162 Kb

Biological Unit Coordinates (3rma.pdb4.gz) 157 Kb

LPC: Ligand-Protein Contacts for 3RMA

CSU: Contacts of Structural Units for 3RMA

Structure Factors (3162 Kb)

Retrieve 3RMA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3RMA from S2C, [Save to disk]

Re-refined 3rma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RMA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rma_G] [3rma_H] [3rma_I] [3rma_J] [3rma_K] [3rma_L] [3rma] [3rma_A] [3rma_B] [3rma_C] [3rma_D] [3rma_E] [3rma_F]

SWISS-PROT database:

Domain found in 3RMA: [POLBc ] by SMART

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