3RMP Dna Binding Protein Dna date Apr 21, 2011
title Structural Basis For The Recognition Of Attp Substrates By P Integrases
authors A.Szwagierczak, G.M.Popowicz, T.A.Holak, A.Rakin, U.Antonenka
compound source
Molecule: Cp4-Like Integrase
Chain: A, C
Fragment: Arm-Type Binding Domain (Unp Residues 1-80)
Synonym: Hpi Integrase, Int Protein, Prophage Integrase
Engineered: Yes
Organism_scientific: Yersinia Pestis
Organism_taxid: 632
Gene: Int, Int2, Ypo1917, Yp_1660, Y2393
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 21

Molecule: 5'-D(Tpapaptpgpapcpcpapcpcpapaptpa
Chain: E, G
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Tpaptptpgpgptpgpgptpcpaptptpa
Chain: F, H
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.280
length a length b length c angle alpha angle beta angle gamma
60.900 69.490 83.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.21 Å
Gene YP
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3rmp.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 3RMP
  • Structure Factors (111 Kb)
  • Retrieve 3RMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RMP from S2C, [Save to disk]
  • Re-refined 3rmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RMP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RMP, from MSDmotif at EBI
  • Fold representative 3rmp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rmp] [3rmp_F] [3rmp_E] [3rmp_H] [3rmp_C] [3rmp_A] [3rmp_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RMP
  • Community annotation for 3RMP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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