3RN4 Oxidoreductase date Apr 21, 2011
title Crystal Structure Of Iron-Substituted Sod2 From Saccharomyce Cerevisiae
authors Y.Kang, Y.X.He, W.Cheng, C.Z.Zhou, W.F.Li
compound source
Molecule: Superoxide Dismutase [Mn], Mitochondrial
Chain: A
Synonym: Mitochondrial Manganese Superoxide Dismutase
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 559292
Strain: S288c
Gene: Sod2, Yhr008c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 2 3
R_factor 0.196 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.690 92.690 92.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand FE enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • superoxide dismutase activit...


  • Primary referenceStructures of native and Fe-substituted SOD2 from Saccharomyces cerevisiae., Kang Y, He YX, Zhao MX, Li WF, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Oct 1;67(Pt 10):1173-8., Epub 2011 Sep 24. PMID:22102021
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3rn4.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 3RN4
  • CSU: Contacts of Structural Units for 3RN4
  • Structure Factors (371 Kb)
  • Retrieve 3RN4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RN4 from S2C, [Save to disk]
  • Re-refined 3rn4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 3RN4
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RN4, from MSDmotif at EBI
  • Fold representative 3rn4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rn4_A] [3rn4]
  • SWISS-PROT database:
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  • Other resources with information on 3RN4
  • Community annotation for 3RN4 at PDBWiki (http://pdbwiki.org)
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