3ROG Protein Binding date Apr 25, 2011
title Crystal Structure Of Mouse Apolipoprotein A-I Binding Protei Complex With Thymidine 3'-Monophosphate
authors I.A.Shumilin, K.N.Jha, M.Cymborowski, J.C.Herr, W.Minor
compound source
Molecule: Apolipoprotein A-I-Binding Protein
Chain: A
Synonym: Ai-Bp
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Aibp, Apoa1bp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: H 3 2
R_factor 0.179 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.094 126.094 110.962 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand MSE, SO4, T3P enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • membrane raft distribution

    • Primary referenceIdentification of Unknown Protein Function Using Metabolite Cocktail Screening., Shumilin IA, Cymborowski M, Chertihin O, Jha KN, Herr JC, Lesley SA, Joachimiak A, Minor W, Structure. 2012 Aug 28. PMID:22940582
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3rog.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (3rog.pdb2.gz) 152 Kb
  • Biological Unit Coordinates (3rog.pdb3.gz) 452 Kb
  • LPC: Ligand-Protein Contacts for 3ROG
  • CSU: Contacts of Structural Units for 3ROG
  • Structure Factors (327 Kb)
  • Retrieve 3ROG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ROG from S2C, [Save to disk]
  • Re-refined 3rog structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ROG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ROG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ROG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rog_A] [3rog]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3ROG
  • Community annotation for 3ROG at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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