3RQX Lyase Lyase Substrate date Apr 28, 2011
title Crystal Structure Of Adpatp-Dependent Nad(P)H-Hydrate Dehyd From Bacillus Subtilis In Complex With P1,P4-Di(Adenosine-5 Tetraphosphate
authors I.A.Shumilin, M.Cymborowski, A.Joachimiak, W.Minor, Midwest Cent Structural Genomics (Mcsg)
compound source
Molecule: Adpatp-Dependent Nad(P)H-Hydrate Dehydratase
Chain: A
Ec: 4.2.1.93
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Bsu38720, Yxko
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-Codonplus (De3)-Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: I 4 2 2
R_factor 0.145 R_Free 0.152
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.585 91.585 168.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand B4P, CL, MG enzyme Lyase E.C.4.2.1.93 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of Unknown Protein Function Using Metabolite Cocktail Screening., Shumilin IA, Cymborowski M, Chertihin O, Jha KN, Herr JC, Lesley SA, Joachimiak A, Minor W, Structure. 2012 Aug 28. PMID:22940582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3rqx.pdb1.gz) 354 Kb
  • LPC: Ligand-Protein Contacts for 3RQX
  • CSU: Contacts of Structural Units for 3RQX
  • Structure Factors (720 Kb)
  • Retrieve 3RQX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RQX from S2C, [Save to disk]
  • Re-refined 3rqx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RQX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RQX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RQX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rqx] [3rqx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3RQX
  • Community annotation for 3RQX at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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