3RR5	Ligase	date	Apr 29, 2011
title	Dna Ligase From The Archaeon Thermococcus Sp. 1519
authors	T.Petrova, E.Y.Bezsudnova, K.M.Boyko, A.V.Mardanov, V.O.Popov, K.M.Polyakov, N.V.Ravin, I.G.Shabalin, K.G.Skryabin, T.N.Stekha M.V.Kovalchuk
compound		source
Molecule: Dna Ligase Chain: A Synonym: Polydeoxyribonucleotide Synthase [Atp] Ec: 6.5.1.1 Engineered: Yes		Organism_scientific: Thermococcus Sp. 1519 Organism_taxid: 619742 Strain: 1519 Gene: Lig Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dlt1270prare-2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe30
symmetry	Space Group: P 21 21 21	R_factor 0.233 R_Free 0.310
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.950 85.600 105.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.02 Å
ligand	MG	enzyme	Ligase E.C.6.5.1.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	ATP-dependent DNA ligase from Thermococcus sp. 1519 displays a new arrangement of the OB-fold domain., Petrova T, Bezsudnova EY, Boyko KM, Mardanov AV, Polyakov KM, Volkov VV, Kozin M, Ravin NV, Shabalin IG, Skryabin KG, Stekhanova TN, Kovalchuk MV, Popov VO, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Dec 1;68(Pt 12):1440-7., doi: 10.1107/S1744309112043394. Epub 2012 Nov 14. PMID:23192021

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (3rr5.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 3RR5 CSU: Contacts of Structural Units for 3RR5 Structure Factors (232 Kb) Retrieve 3RR5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RR5 from S2C, [Save to disk] Re-refined 3rr5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RR5 in 3D

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Visual 3D analysis of 3RR5

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RR5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rr5] [3rr5_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3RR5

Community annotation for 3RR5 at PDBWiki (http://pdbwiki.org)

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