3RT3 Antiviral Protein Viral Protein date May 03, 2011
title Complex Of Influenza Virus Protein With Host Anti-Viral Fact
authors X.Q.Wang, L.Li
compound source
Molecule: Ubiquitin-Like Protein Isg15
Chain: B
Synonym: Interferon-Induced 15 Kda Protein, Interferon-Indu Protein, Ip17, Ubiquitin Cross-Reactive Protein, Hucrp;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Isg15, G1p2, Ucrp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1

Molecule: Non-Structural Protein 1
Chain: C
Fragment: N-Terminal G1p2-Binding Domain, Unp Residues 1-10
Synonym: Ns1, Ns1b
Engineered: Yes

Organism_scientific: Influenza B Virus
Organism_taxid: 107412
Strain: Blee1940
Gene: Ns
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b
symmetry Space Group: C 1 2 1
R_factor 0.189 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.674 39.147 74.704 90.00 90.46 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand SIN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3rt3.pdb1.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 3RT3
  • CSU: Contacts of Structural Units for 3RT3
  • Structure Factors (251 Kb)
  • Retrieve 3RT3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RT3 from S2C, [Save to disk]
  • Re-refined 3rt3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RT3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RT3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RT3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rt3] [3rt3_B] [3rt3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RT3: [UBQ ] by SMART
  • Other resources with information on 3RT3
  • Community annotation for 3RT3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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