OCA Atlas for 3RTR

3RTR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, C, G, A
F, B, H, D

Primary reference

A RING E3-substrate complex poised for ubiquitin-like protein transfer: structural insights into cullin-RING ligases., Calabrese MF, Scott DC, Duda DM, Grace CR, Kurinov I, Kriwacki RW, Schulman BA, Nat Struct Mol Biol. 2011 Jul 17;18(8):947-9. doi: 10.1038/nsmb.2086. PMID:21765416

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (601 Kb) [Save to disk]

Biological Unit Coordinates (3rtr.pdb1.gz) 155 Kb

Biological Unit Coordinates (3rtr.pdb2.gz) 155 Kb

Biological Unit Coordinates (3rtr.pdb3.gz) 141 Kb

Biological Unit Coordinates (3rtr.pdb4.gz) 154 Kb

LPC: Ligand-Protein Contacts for 3RTR

CSU: Contacts of Structural Units for 3RTR

Structure Factors (319 Kb)

Retrieve 3RTR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3RTR from S2C, [Save to disk]

Re-refined 3rtr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RTR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rtr] [3rtr_A] [3rtr_B] [3rtr_C] [3rtr_D] [3rtr_E] [3rtr_F] [3rtr_G] [3rtr_H]

SWISS-PROT database:

Domains found in 3RTR: [CULLIN] [Cullin_Nedd8] [RING ] by SMART

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