OCA Atlas for 3RUG

3RUG

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

DB6, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, D

Primary reference

A semi-invariant V(alpha)10(+) T cell antigen receptor defines a population of natural killer T cells with distinct glycolipid antigen-recognition properties., Uldrich AP, Patel O, Cameron G, Pellicci DG, Day EB, Sullivan LC, Kyparissoudis K, Kjer-Nielsen L, Vivian JP, Cao B, Brooks AG, Williams SJ, Illarionov P, Besra GS, Turner SJ, Porcelli SA, McCluskey J, Smyth MJ, Rossjohn J, Godfrey DI, Nat Immunol. 2011 Jun 12;12(7):616-23. doi: 10.1038/ni.2051. PMID:21666690

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]

Biological Unit Coordinates (3rug.pdb1.gz) 135 Kb

Biological Unit Coordinates (3rug.pdb2.gz) 135 Kb

LPC: Ligand-Protein Contacts for 3RUG

CSU: Contacts of Structural Units for 3RUG

Structure Factors (5250 Kb)

Retrieve 3RUG in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3RUG from S2C, [Save to disk]

Re-refined 3rug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RUG in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rug] [3rug_A] [3rug_B] [3rug_C] [3rug_D] [3rug_E] [3rug_F] [3rug_G] [3rug_H]

SWISS-PROT database:

Domains found in 3RUG: [IG_like] [IGc1] [IGv ] by SMART

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