3RUU Transcription Regulator date May 05, 2011
title Fxr With Src1 And Gsk237
authors S.P.Williams, K.P.Madauss
compound source
Molecule: Bile Acid Receptor
Chain: A
Fragment: Ligand Binding Domain (Unp Residues 258-486)
Synonym: Fxr, Farnesoid X-Activated Receptor, Farnesol Rece 1, Nuclear Receptor Subfamily 1 Group H Member 4, Retinoid Receptor-Interacting Protein 14, Rxr-Interacting Protein 14
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bar, Fxr, Hrr1, Nr1h4, Rip14
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prseta

Molecule: Nuclear Receptor Coactivator 1
Chain: B
Fragment: Unp Residues 745-755
Synonym: Src1, Ncoa-1, Class E Basic Helix-Loop-Helix Prote Bhlhe74, Protein Hin-2, Rip160, Renal Carcinoma Antigen Ny- Steroid Receptor Coactivator 1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: F 2 3
R_factor 0.213 R_Free 0.253
length a length b length c angle alpha angle beta angle gamma
159.605 159.605 159.605 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 37G, SO4 BindingDB enzyme Transferase E.C. BRENDA

Primary referenceConformationally constrained farnesoid X receptor (FXR) agonists: Alternative replacements of the stilbene., Akwabi-Ameyaw A, Caravella JA, Chen L, Creech KL, Deaton DN, Madauss KP, Marr HB, Miller AB, Navas F 3rd, Parks DJ, Spearing PK, Todd D, Williams SP, Wisely GB, Bioorg Med Chem Lett. 2011 Aug 11. PMID:21890356
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3ruu.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3RUU
  • CSU: Contacts of Structural Units for 3RUU
  • Structure Factors (193 Kb)
  • Retrieve 3RUU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RUU from S2C, [Save to disk]
  • Re-refined 3ruu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RUU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RUU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RUU, from MSDmotif at EBI
  • Fold representative 3ruu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ruu] [3ruu_B] [3ruu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RUU: [HOLI ] by SMART
  • Other resources with information on 3RUU
  • Community annotation for 3RUU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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