3RUX Ligase Ligase Inhibitor date May 05, 2011
title Crystal Structure Of Biotin-Protein Ligase Bira From Mycobac Tuberculosis In Complex With An Acylsulfamide Bisubstrate I
authors T.W.Geders, B.C.Finzel
compound source
Molecule: Bira Bifunctional Protein
Chain: A, B
Synonym: Possible Bifunctional Protein Bira: Biotin Operon + Biotin--[Acetyl-Coa-Carboxylase] Synthetase (Biotin--Prot Ligase);
Ec: 6.3.4.15
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Strain: H37rv
Gene: Bira, Mt3379, Rv3279c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Mach I
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28b
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.882 68.802 115.755 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BS5 enzyme Ligase E.C.6.3.4.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBisubstrate Adenylation Inhibitors of Biotin Protein Ligase from Mycobacterium tuberculosis., Duckworth BP, Geders TW, Tiwari D, Boshoff HI, Sibbald PA, Barry CE 3rd, Schnappinger D, Finzel BC, Aldrich CC, Chem Biol. 2011 Nov 23;18(11):1432-41. PMID:22118677
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3rux.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (3rux.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3RUX
  • CSU: Contacts of Structural Units for 3RUX
  • Structure Factors (941 Kb)
  • Retrieve 3RUX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RUX from S2C, [Save to disk]
  • Re-refined 3rux structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RUX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RUX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RUX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rux_B] [3rux] [3rux_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RUX
  • Community annotation for 3RUX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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