3RWR Dna Binding Protein Protein Binding date May 09, 2011
title Crystal Structure Of The Human Xrcc4-Xlf Complex
authors S.N.Andres, M.S.Junop
compound source
Molecule: Dna Repair Protein Xrcc4
Chain: A, B, F, G, J, K, N, P, R, V, U, Y
Fragment: Unp Residues 1-157
Synonym: X-Ray Repair Cross-Complementing Protein 4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xrcc4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid

Molecule: Non-Homologous End-Joining Factor 1
Chain: D, E, H, I, L, M, O, Q, S, W, T, X
Fragment: Unp Residues 1-224
Synonym: Protein Cernunnos, Xrcc4-Like Factor
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nhej1, Xlf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.271 R_Free 0.326
crystal
cell
length a length b length c angle alpha angle beta angle gamma
745.379 149.585 80.475 90.00 94.72 90.00
method X-Ray Diffractionresolution 3.94 Å
ligand TBR enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, Y, V, A, J, P, B, R, G, U


S, T, E, Q, M, L, O, W, X, H, D, I


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (760 Kb) [Save to disk]
  • Biological Unit Coordinates (3rwr.pdb1.gz) 255 Kb
  • LPC: Ligand-Protein Contacts for 3RWR
  • CSU: Contacts of Structural Units for 3RWR
  • Structure Factors (743 Kb)
  • Retrieve 3RWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RWR from S2C, [Save to disk]
  • Re-refined 3rwr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RWR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RWR, from MSDmotif at EBI
  • Fold representative 3rwr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rwr_X] [3rwr_V] [3rwr_O] [3rwr_N] [3rwr_I] [3rwr_M] [3rwr_U] [3rwr_D] [3rwr_K] [3rwr_S] [3rwr_E] [3rwr_L] [3rwr_B] [3rwr_G] [3rwr_W] [3rwr_H] [3rwr_Y] [3rwr_A] [3rwr_J] [3rwr_T] [3rwr_P] [3rwr] [3rwr_R] [3rwr_F] [3rwr_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RWR
  • Community annotation for 3RWR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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