3RY4 Immune System date May 11, 2011
title 1.5 Angstrom Resolution Structure Of Glycosylated Fcgammarii Responder Polymorphism)
authors P.A.Ramsland, W.Farrugia, P.M.Hogarth
compound source
Molecule: Low Affinity Immunoglobulin Gamma Fc Region Recep
Chain: A
Fragment: Extracellular Domain, Residues 37-206
Synonym: Igg Fc Receptor II-A, Cdw32, Fc-Gamma Rii-A, Fc-Ga Fcrii-A;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Gene: Cd32, Fcg2, Fcgr2a, Fcgr2a1, Igfr2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1392
symmetry Space Group: P 21 21 2
R_factor 0.203 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.343 100.407 27.937 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL, NAG enzyme
note 3RY4 is a representative structure
Primary referenceStructural Basis for Fc{gamma}RIIa Recognition of Human IgG and Formation of Inflammatory Signaling Complexes., Ramsland PA, Farrugia W, Bradford TM, Sardjono CT, Esparon S, Trist HM, Powell MS, Tan PS, Cendron AC, Wines BD, Scott AM, Hogarth PM, J Immunol. 2011 Aug 19. PMID:21856937
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3ry4.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3RY4
  • CSU: Contacts of Structural Units for 3RY4
  • Structure Factors (619 Kb)
  • Retrieve 3RY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RY4 from S2C, [Save to disk]
  • Re-refined 3ry4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RY4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RY4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ry4] [3ry4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RY4: [IG ] by SMART
  • Other resources with information on 3RY4
  • Community annotation for 3RY4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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