3RZE Hydrolase date May 11, 2011
title Structure Of The Human Histamine H1 Receptor In Complex With
authors T.Shimamura, G.W.Han, M.Shiroishi, S.Weyand, H.Tsujimoto, G.Winte V.Katritch, R.Abagyan, V.Cherezov, W.Liu, T.Kobayashi, R.Stevens Gpcr Network (Gpcr)
compound source
Molecule: Histamine H1 Receptor, Lysozyme Chimera
Chain: A
Synonym: H1r, Hh1r, Endolysin, Lysis Protein, Muramidase
Engineered: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: Hrh1, E
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Smd1163
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic9k
symmetry Space Group: I 4 2 2
R_factor 0.215 R_Free 0.249
length a length b length c angle alpha angle beta angle gamma
88.144 88.144 331.654 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand 5EH, D7V, OLC, PO4 enzyme Hydrolase E.C. BRENDA

Primary referenceStructure of the human histamine H1 receptor complex with doxepin., Shimamura T, Shiroishi M, Weyand S, Tsujimoto H, Winter G, Katritch V, Abagyan R, Cherezov V, Liu W, Han GW, Kobayashi T, Stevens RC, Iwata S, Nature. 2011 Jun 22;475(7354):65-70. doi: 10.1038/nature10236. PMID:21697825
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (3rze.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 3RZE
  • CSU: Contacts of Structural Units for 3RZE
  • Structure Factors (260 Kb)
  • Retrieve 3RZE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RZE from S2C, [Save to disk]
  • Re-refined 3rze structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RZE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RZE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RZE, from MSDmotif at EBI
  • Fold representative 3rze from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rze_A] [3rze]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RZE
  • Community annotation for 3RZE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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