3S2A Transferase Transferase Inhibitor date May 16, 2011
title Crystal Structure Of Pi3k-Gamma In Complex With A Quinoline
authors D.A.Whittington, J.Tang, P.Yakowec
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Fragment: Catalytic Domain (Unp Residues 144-1102)
Synonym: Pi3-Kinase Subunit Gamma, Pi3k-Gamma, Ptdins-3-Kin Subunit Gamma, Phosphatidylinositol-4,5-Bisphosphate 3-Kina Catalytic Subunit Gamma, Ptdins-3-Kinase Subunit P110-Gamma Pi3k;
Ec: 2.7.1.153
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cg
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.234 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.465 68.169 107.347 90.00 94.80 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand 2NQ, SO4 BindingDB enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePhospshoinositide 3-Kinase (PI3K)/Mammalian Target of Rapamycin (mTOR) Dual Inhibitors: Discovery and Structure-Activity Relationships of a Series of Quinoline and Quinoxaline Derivatives., Nishimura N, Siegmund A, Liu L, Yang K, Bryan MC, Andrews KL, Bo Y, Booker SK, Caenepeel S, Freeman DJ, Liao H, McCarter JD, Mullady EL, San Miguel T, Subramanian R, Tamayo N, Wang L, Whittington DA, Zalameda LP, Zhang N, Hughes PE, Norman MH, J Med Chem. 2011 May 25. PMID:21612232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]
  • Biological Unit Coordinates (3s2a.pdb1.gz) 286 Kb
  • LPC: Ligand-Protein Contacts for 3S2A
  • CSU: Contacts of Structural Units for 3S2A
  • Structure Factors (497 Kb)
  • Retrieve 3S2A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S2A from S2C, [Save to disk]
  • Re-refined 3s2a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S2A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S2A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S2A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s2a_A] [3s2a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3S2A: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 3S2A
  • Community annotation for 3S2A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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