3S2Z Hydrolase date May 17, 2011
title Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl E Lj0536 S106a Mutant In Complex With Caffeic Acid
authors P.J.Stogios, K.K.Lai, C.Vu, X.Xu, H.Cui, S.Molloy, C.F.Gonzalez, A. A.Savchenko
compound source
Molecule: Cinnamoyl Esterase
Chain: A, B
Ec: 3.1.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Lactobacillus Johnsonii
Organism_taxid: 33959
Gene: Lj0536
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv-L
symmetry Space Group: C 1 2 1
R_factor 0.143 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.318 84.168 87.604 90.00 97.56 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand CL, DHC enzyme Hydrolase E.C.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAn inserted alpha/beta subdomain shapes the catalytic pocket of Lactobacillus johnsonii cinnamoyl esterase., Lai KK, Stogios PJ, Vu C, Xu X, Cui H, Molloy S, Savchenko A, Yakunin A, Gonzalez CF, PLoS One. 2011;6(8):e23269. Epub 2011 Aug 18. PMID:21876742
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (3s2z.pdb1.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 3S2Z
  • CSU: Contacts of Structural Units for 3S2Z
  • Structure Factors (748 Kb)
  • Retrieve 3S2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S2Z from S2C, [Save to disk]
  • Re-refined 3s2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S2Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S2Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s2z] [3s2z_B] [3s2z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S2Z
  • Community annotation for 3S2Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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