3S3M	Recombination Inhibitor Dna	date	May 18, 2011
title	Crystal Structure Of The Prototype Foamy Virus (Pfv) Intasom Complex With Magnesium And Dolutegravir (Sgsk1349572)
authors	S.Hare, P.Cherepanov
compound		source
Molecule: Pfv Integrase Chain: A, B Synonym: In, P42in Ec: 2.7.7.- Engineered: Yes		Organism_scientific: Human Spumaretrovirus Organism_common: Sfvcpz(Hu), Human Foamy Virus Organism_taxid: 11963 Strain: Hsrv2 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Pc2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pssh6p-Pfv-Infl
Molecule: 5'-D(Aptptpgptpcpaptpgpgpapaptptpt A)-3'; Chain: C Engineered: Yes Other_details: 19 Nucleotide Preprocessed Pfv Donor Dna (No Transferred Strand);		Synthetic: Yes Other_details: Synthesized Oligonucleotide
Molecule: 5'-D(Tpgpcpgpapapaptptpcpcpaptpgpa 3'; Chain: D Engineered: Yes Other_details: 17 Nucleotide Preprocessed Pfv Donor Dna (Tr Strand)		Synthetic: Yes Other_details: Synthesized Oligonucleotide
symmetry	Space Group: P 41 21 2	R_factor 0.206 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 160.140 160.140 123.430 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.49 Å
ligand	DLU, GOL, HEZ, MG, NH4, SO4, ZN	enzyme	Transferase E.C.2.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and Functional Analyses of the Second-generation Integrase Strand Transfer Inhibitor Dolutegravir (S/GSK1349572)., Hare S, Smith SJ, Metifiot M, Jaxa-Chamiec A, Pommier Y, Hughes SH, Cherepanov P, Mol Pharmacol. 2011 Jun 30. PMID:21719464

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk] Biological Unit Coordinates (3s3m.pdb1.gz) 214 Kb LPC: Ligand-Protein Contacts for 3S3M CSU: Contacts of Structural Units for 3S3M Structure Factors (2618 Kb) Retrieve 3S3M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3S3M from S2C, [Save to disk] Re-refined 3s3m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3S3M

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3S3M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3s3m] [3s3m_C] [3s3m_B] [3s3m_A] [3s3m_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 3S3M at PDBWiki (http://pdbwiki.org)

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