3S41 Transferase date May 18, 2011
title Glucokinase In Complex With Activator And Glucose
authors S.Liu
compound source
Molecule: Glucokinase
Chain: A
Fragment: Sequence Database Residues 12-465
Synonym: Hexokinase Type Iv, Hk Iv, Hexokinase-4, Hk4, Hexo
Ec: 2.7.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gck
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.010 82.200 86.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.18 Å
ligand GLC, NA, S41 BindingDB enzyme Transferase E.C.2.7.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3s41.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3S41
  • CSU: Contacts of Structural Units for 3S41
  • Structure Factors (473 Kb)
  • Retrieve 3S41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S41 from S2C, [Save to disk]
  • Re-refined 3s41 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S41
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3S41, from MSDmotif at EBI
  • Fold representative 3s41 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s41] [3s41_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S41
  • Community annotation for 3S41 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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