3S5O	Lyase	date	May 23, 2011
title	Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate Aldolase Pyruvate
authors	T.J.Riedel, W.T.Lowther
compound		source
Molecule: 4-Hydroxy-2-Oxoglutarate Aldolase, Mitochondrial Chain: A Synonym: Dihydrodipicolinate Synthase-Like, Dhdps-Like Prot Keto-4-Hydroxyglutarate Aldolase, Khg-Aldolase, Protein 569 Ec: 4.1.3.16 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: C10orf65, Dhdpsl, Hoga1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmal
symmetry	Space Group: P 64 2 2	R_factor 0.196 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.230 141.230 108.388 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.97 Å
ligand	EDO, K, KPI	enzyme	Lyase E.C.4.1.3.16 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and Biochemical Studies of Human 4-hydroxy-2-oxoglutarate Aldolase: Implications for Hydroxyproline Metabolism in Primary Hyperoxaluria., Riedel TJ, Johnson LC, Knight J, Hantgan RR, Holmes RP, Lowther WT, PLoS One. 2011;6(10):e26021. Epub 2011 Oct 6. PMID:21998747

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3s5o.pdb1.gz) 198 Kb LPC: Ligand-Protein Contacts for 3S5O CSU: Contacts of Structural Units for 3S5O Structure Factors (675 Kb) Retrieve 3S5O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3S5O from S2C, [Save to disk] Re-refined 3s5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3S5O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3S5O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3S5O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3s5o_A] [3s5o] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3S5O: [DHDPS ] by SMART

Other resources with information on 3S5O

Community annotation for 3S5O at PDBWiki (http://pdbwiki.org)

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