3S67 Hydrolase Inhibitor date May 25, 2011
title Crystal Structure Of V57p Mutant Of Human Cystatin C
authors M.Orlikowska, A.Szymanska, D.Borek, Z.Otwinowski, P.Skowron, E.Ja
compound source
Molecule: Cystatin-C
Chain: A
Synonym: Cystatin-3, Gamma-Trace, Neuroendocrine Basic Poly Post-Gamma-Globulin;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cst3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41
Expression_system_plasmid: Phd313
symmetry Space Group: I 4 3 2
R_factor 0.187 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.135 140.135 140.135 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.26 Å
ligand ACT, CL, IMD, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural characterization of V57D and V57P mutants of human cystatin C, an amyloidogenic protein., Orlikowska M, Szymanska A, Borek D, Otwinowski Z, Skowron P, Jankowska E, Acta Crystallogr D Biol Crystallogr. 2013 Apr;69(Pt 4):577-86. doi:, 10.1107/S0907444912051657. Epub 2013 Mar 14. PMID:23519666
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3s67.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 3S67
  • CSU: Contacts of Structural Units for 3S67
  • Structure Factors (173 Kb)
  • Retrieve 3S67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S67 from S2C, [Save to disk]
  • Re-refined 3s67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S67
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3S67, from MSDmotif at EBI
  • Fold representative 3s67 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s67_A] [3s67]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S67: [CY ] by SMART
  • Alignments of the sequence of 3S67 with the sequences similar proteins can be viewed for 3S67's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3S67
  • Community annotation for 3S67 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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