3S6C Immune System, Lipid Binding Protein date May 25, 2011
title Structure Of Human Cd1e
authors L.F.Garcia-Alles, L.Maveyraud, S.Tranier, L.Mourey
compound source
Molecule: Beta-2-Microglobulin, T-Cell Surface Glycoprotein Membrane-Associated;
Chain: A
Fragment: P61769 Residues 21-119, P15812 Residues 32-303
Engineered: Yes
Other_details: Fusion Of Beta-2 Microglobulin And Cd1e Heav
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cd1e
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: M10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfuse-Migg1
symmetry Space Group: C 1 2 1
R_factor 0.241 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
206.289 45.930 65.628 90.00 91.48 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand FUC, GOL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • cellular response to iron io...

  • Primary referenceCrystal structure of human CD1e reveals a groove suited for lipid-exchange processes., Garcia-Alles LF, Giacometti G, Versluis C, Maveyraud L, de Paepe D, Guiard J, Tranier S, Gilleron M, Prandi J, Hanau D, Heck AJ, Mori L, De Libero G, Puzo G, Mourey L, de la Salle H, Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13230-5. Epub 2011 Jul 25. PMID:21788486
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (3s6c.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 3S6C
  • CSU: Contacts of Structural Units for 3S6C
  • Structure Factors (204 Kb)
  • Retrieve 3S6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S6C from S2C, [Save to disk]
  • Re-refined 3s6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S6C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S6C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s6c] [3s6c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S6C: [IGc1 ] by SMART
  • Other resources with information on 3S6C
  • Community annotation for 3S6C at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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