3S7B Transferase date May 26, 2011
title Structural Basis Of Substrate Methylation And Inhibition Of
authors A.D.Ferguson
compound source
Molecule: N-Lysine Methyltransferase Smyd2
Chain: A
Synonym: Hskm-B, Histone Methyltransferase Smyd2, Lysine N- Methyltransferase 3c, Set And Mynd Domain-Containing Protei
Ec: 2.1.1.-, 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smyd2, Kmt3c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.174 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.860 155.860 52.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.42 Å
ligand BU3, NH5, SAM, ZN BindingDB enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone methyltransferase ac...


  • Primary referenceStructural Basis of Substrate Methylation and Inhibition of SMYD2., Ferguson AD, Larsen NA, Howard T, Pollard H, Green I, Grande C, Cheung T, Garcia-Arenas R, Cowen S, Wu J, Godin R, Chen H, Keen N, Structure. 2011 Jul 20. PMID:21782458
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (3s7b.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 3S7B
  • CSU: Contacts of Structural Units for 3S7B
  • Structure Factors (1092 Kb)
  • Retrieve 3S7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S7B from S2C, [Save to disk]
  • Re-refined 3s7b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S7B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3S7B, from MSDmotif at EBI
  • Fold representative 3s7b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s7b_A] [3s7b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S7B: [SET ] by SMART
  • Other resources with information on 3S7B
  • Community annotation for 3S7B at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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