3S7J Transferase date May 26, 2011
title Structural Basis Of Substrate Methylation And Inhibition Of
authors A.D.Ferguson
compound source
Molecule: N-Lysine Methyltransferase Smyd2
Chain: A
Synonym: Hskm-B, Histone Methyltransferase Smyd2, Lysine N- Methyltransferase 3c, Set And Mynd Domain-Containing Protei
Ec: 2.1.1.-,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smyd2, Kmt3c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.194 R_Free 0.210
length a length b length c angle alpha angle beta angle gamma
154.565 154.565 53.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.04 Å
ligand SAM, ZN enzyme Transferase E.C.2.1.1 BRENDA
  • histone methyltransferase ac...

  • Primary referenceStructural Basis of Substrate Methylation and Inhibition of SMYD2., Ferguson AD, Larsen NA, Howard T, Pollard H, Green I, Grande C, Cheung T, Garcia-Arenas R, Cowen S, Wu J, Godin R, Chen H, Keen N, Structure. 2011 Jul 20. PMID:21782458
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (3s7j.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 3S7J
  • CSU: Contacts of Structural Units for 3S7J
  • Structure Factors (187 Kb)
  • Retrieve 3S7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S7J from S2C, [Save to disk]
  • Re-refined 3s7j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S7J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3S7J, from MSDmotif at EBI
  • Fold representative 3s7j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s7j] [3s7j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S7J: [SET ] by SMART
  • Other resources with information on 3S7J
  • Community annotation for 3S7J at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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