3S8S Transcription date May 30, 2011
title Crystal Structure Of The Rrm Domain Of Human Setd1a
authors X.Chao, W.Tempel, C.Bian, T.Cerovina, J.R.Walker, C.Bountra, J.Wei C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consor (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase Setd1a
Chain: A
Synonym: Lysine N-Methyltransferase 2f, Set Domain-Containi 1a, Hset1a, Set1ash2 Histone Methyltransferase Complex Sub
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Setd1a, Kiaa0339, Kmt2f, Set1, Set1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 1 21 1
R_factor 0.168 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.650 31.510 39.320 90.00 114.12 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand UNX enzyme
note 3S8S is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (3s8s.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 3S8S
  • CSU: Contacts of Structural Units for 3S8S
  • Structure Factors (273 Kb)
  • Retrieve 3S8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S8S from S2C, [Save to disk]
  • Re-refined 3s8s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S8S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S8S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s8s] [3s8s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S8S: [RRM ] by SMART
  • Other resources with information on 3S8S
  • Community annotation for 3S8S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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