3S93 Transcription date May 31, 2011
title Crystal Structure Of Conserved Motif In Tdrd5
authors X.Chao, W.Tempel, C.Bian, J.Kania, A.K.Wernimont, C.Bountra, J.Wei C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consor (Sgc)
compound source
Molecule: Tudor Domain-Containing Protein 5
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tdrd5
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.245 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.940 43.330 126.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3s93.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (3s93.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 3S93
  • CSU: Contacts of Structural Units for 3S93
  • Structure Factors (1264 Kb)
  • Retrieve 3S93 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S93 from S2C, [Save to disk]
  • Re-refined 3s93 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S93 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S93
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3S93, from MSDmotif at EBI
  • Fold representative 3s93 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s93] [3s93_A] [3s93_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S93
  • Community annotation for 3S93 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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