3S95 Transferase Antibiotic date May 31, 2011
title Crystal Structure Of The Human Limk1 Kinase Domain In Comple Staurosporine
authors A.Beltrami, A.Chaikuad, N.Daga, J.M.Elkins, P.Mahajan, P.Savitsky M.Vollmar, T.Krojer, J.R.C.Muniz, O.Fedorov, C.K.Allerston, W.W. O.Gileadi, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, S.Knapp, A.Bullock, Structural Genomics Consortium
compound source
Molecule: Lim Domain Kinase 1
Chain: A, B
Fragment: Kinase Domain (Residue 330-637)
Synonym: Limk-1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Limk, Limk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: C 2 2 21
R_factor 0.155 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.160 128.000 131.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CL, GOL, MRD, NA, STU, TRS enzyme Transferase E.C.2.7.11.1 BRENDA
note 3S95 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (3s95.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (3s95.pdb2.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 3S95
  • CSU: Contacts of Structural Units for 3S95
  • Structure Factors (1626 Kb)
  • Retrieve 3S95 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S95 from S2C, [Save to disk]
  • Re-refined 3s95 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S95 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S95
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S95, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s95] [3s95_B] [3s95_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S95: [STYKc ] by SMART
  • Other resources with information on 3S95
  • Community annotation for 3S95 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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