3S9L Transport Protein date Jun 01, 2011
title Complex Between Transferrin Receptor 1 And Transferrin With The N-Lobe, Cryocooled 2
authors B.E.Eckenroth, A.N.Steere, A.B.Mason, S.J.Everse
compound source
Molecule: Transferrin Receptor Protein 1
Chain: A, B
Fragment: Unp Residues 120-760
Synonym: Tr, Tfr, Tfr1, Trfr, T9, P90, Transferrin Receptor 1, Serum Form, Stfr;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tfr1, Tfrc
Expression_system: Cricetinae
Expression_system_taxid: 10026
Expression_system_strain: Bhk Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnut

Molecule: Serotransferrin
Chain: C, D
Fragment: Unp Residues 20-698
Synonym: Transferrin, Beta-1 Metal-Binding Globulin, Sidero
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pro1400, Tf
Expression_system: Cricetinae
Expression_system_taxid: 10026
Expression_system_strain: Bhk Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnut
symmetry Space Group: P 43 2 2
R_factor 0.271 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
231.676 231.676 168.955 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.22 Å
ligand CA, CO3, FE, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C
  • transferrin receptor binding...


  • Primary referenceHow the binding of human transferrin primes the transferrin receptor potentiating iron release at endosomal pH., Eckenroth BE, Steere AN, Chasteen ND, Everse SJ, Mason AB, Proc Natl Acad Sci U S A. 2011 Jul 25. PMID:21788477
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (3s9l.pdb1.gz) 325 Kb
  • Biological Unit Coordinates (3s9l.pdb2.gz) 307 Kb
  • LPC: Ligand-Protein Contacts for 3S9L
  • CSU: Contacts of Structural Units for 3S9L
  • Structure Factors (1570 Kb)
  • Retrieve 3S9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S9L from S2C, [Save to disk]
  • Re-refined 3s9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S9L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3S9L, from MSDmotif at EBI
  • Fold representative 3s9l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s9l_D] [3s9l_A] [3s9l_C] [3s9l_B] [3s9l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S9L: [TR_FER ] by SMART
  • Other resources with information on 3S9L
  • Community annotation for 3S9L at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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