3SAT Hydrolase Dna date Jun 03, 2011
title Mutm Slanted Complex 6 With R112a Mutation
authors Y.Qi, G.L.Verdine
compound source
Molecule: Dna Glycosylase
Chain: A
Ec: 4.2.99.18
Engineered: Yes
Mutation: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_common: Bacillus Thermoliquefaciens
Organism_taxid: 1422
Gene: Mutm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24b

Molecule: 5'-D(Apgpgtpapgpapcpcpapgpgpapcpgp
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Tpgpcpgptcpcptpgpgp(Tx2) Pcptp 3';
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.487 97.574 102.371 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand GOL, TX2, ZN enzyme Lyase E.C.4.2.99.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStrandwise translocation of a DNA glycosylase on undamaged DNA., Qi Y, Nam K, Spong MC, Banerjee A, Sung RJ, Zhang M, Karplus M, Verdine GL, Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1086-91. Epub 2012 Jan 4. PMID:22219368
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3sat.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3SAT
  • CSU: Contacts of Structural Units for 3SAT
  • Structure Factors (257 Kb)
  • Retrieve 3SAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SAT from S2C, [Save to disk]
  • Re-refined 3sat structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SAT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SAT, from MSDmotif at EBI
  • Fold representative 3sat from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sat_A] [3sat] [3sat_C] [3sat_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3SAT: [Fapy_DNA_glyco] [H2TH ] by SMART
  • Other resources with information on 3SAT
  • Community annotation for 3SAT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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